Beetle byte (11 October 2013 edition)

This week a few infographics, along some other mandibular tidbits.

How to resurrect extinct megafauna (infographic)

 

How about just halting extinctions of extant megafauna? (infographic)

 

Did that spider really bite you? (infographic)

On the topic of spider bites, please also read this and this.

 

Your weekly dose of cute

 This (video) captures the first moments of life at a windswept Spoon-billed Sandpiper nest. When the young finally hatch and emerge from the nest, after 21 days of incubation, they stumble about on well-developed legs and feet and begin to feed themselves. Females lay 4 eggs in a simple tundra nest in a shallow depression, most often in mosses, lined with a few dwarf willow leaves. Both adults incubate the nest, taking half-day shifts. The male most often incubates during the day and the female at night. After the last chick hatches, the male begins his job of leading the chicks as they grow and become independent about 20 days later. The female departs soon after hatching and begins moving south.

 

Click. Click. Click. Click…

We watch a 30-second ad in exchange for a video; we solicit a friend’s endorsement; we freely pour sentence after sentence, hour after hour, into status updates and stock responses. None of this depletes our bank balances. Yet its cumulative cost, while hard to quantify, affects many of those things we hope to put at the heart of a happy life: rich relationships, rewarding leisure, meaningful work, peace of mind.

What kind of attention do we deserve from those around us, or owe to them in return? What kind of attention do we ourselves deserve, or need, if we are to be ‘us’ in the fullest possible sense? These aren’t questions that even the most finely tuned popularity contest can resolve. Yet, if contentment and a sense of control are partial measures of success, many of us are selling ourselves far too cheap.

 

Bro?

The emergent cultural prominence of this more nuanced bro has been accompanied by a rise of new coinages based on the word. With its instantly recognizable consonant cluster, bro lends itself not only to compounding, as in bro-hug (an awkward hug between bros) or bro-step (dubstep for bros), but also to blending, that favorite technique of humorous neologists, who have coined such portmanteaux as bro-down (from hoedown), bromance (from romance), and brohemian (from bohemian).

Searching for a promising scholar

  • Are you deeply interested in insect ecology?
  • Are you excited about exploring the intersection of plant defenses and insect overwintering survival using both traditional field work and cutting-edge molecular tools?
  • Would you like to do your graduate degree research at a small, research-intensive university in a great community surrounded in all directions by forests?
  • Are you looking for an opportunity to develop a network of collaborators from a variety of other institutions during your graduate studies?

Our lab is looking for a graduate student (M.Sc. or Ph.D. level) or a postdoc, and a promising scholar of natural history, to join us in studying how pine host defenses affect mountain pine beetle larval overwintering success in its normal hosts (e.g. lodgepole pine) and a novel host (jack pine) across its expanding range. What are the tree chemical defenses that larval mountain pine beetles experience in their early development? How long after a tree has been killed do those defenses remain in the tree tissues? How do those defenses affect larval growth, development, and physiological preparation for surviving the extreme cold of a northern winter? What are some of the specific genes that are instrumental in helping the larvae obtain enough nutrition from the toxic environment of their host tree to allow them to survive the winter? What are the effects of climate and a new host species in a new geographical range on larval survival? How might these affect the spread of this invasive insect?

Work on your project will take place wherever the beetles and the host trees live. That will mean extensive field work in the summers, including trips to other parts of British Columbia, into Alberta, and perhaps beyond. In addition, there will be plenty of lab work throughout the year using techniques ranging from analytical chemistry to RNAi.

This work is funded by a major grant and is an extension of five years of previous successful and highly collaborative work. That means a number of things…

First it means that there is secure funding for several years of your research. This includes funds for materials, travel, conferences, and publication fees. It also includes funds for student stipends. However I would strongly encourage applicants to look for their own funding as well. More on that in a moment.

Second, it means that there is a preexisting network of institutions and researchers who you will be able to work with during the course of your degree. The “network” grant ensures that we continue to maintain close collaborative relationships with other scientists at the University of British Columbia, the University of Alberta, the Natural Resources Canada Canadian Forest Service, and the University of Minnesota. A strong collaborative network, such as this one that we have developed over several years, is beneficial to you as a graduate student both by providing research opportunities and because it may lead to further career opportunities beyond your graduate studies.

Third, it means that you will be working on a solid foundation of results, data, and ideas. You will have the opportunity to push hard against the envelope of our current knowledge. You can find a fairly up-to-date list of papers that have come out of our collaborative research so far at this link. I would specifically recommend that you carefully read those papers that I linked a few paragraphs above – as well as this, this, this, and one more to appear here shortly – prior to considering whether this position might be for you.

Graduate studies are not easy by any stretch. Ask anyone who has done them, or fellow students who are in the midst of their work. But they can be the most richly challenging and rewarding time of your life. While doctoral degrees are awarded to successful candidates for their ability to develop and defend new ideas, explore hypotheses, and communicate findings to various audiences in a robust manner, those things are only an outworking of something deeper. A course of graduate studies is, more often than not, a journey of maturation as a scientist and a scholar. So I am looking for someone to join our research program who can demonstrate that they are ready to embark on that road. Specifically, I am looking for someone:

  • who has shown that they are capable of committed work over an extended period of time,
  • who can work equally well in the lab or in the field,
  • who has shown that they are capable of scholarly output (e.g., papers, presentations at conferences, etc.) even early in their scientific career,
  • who is able to develop novel hypotheses and pursue them with passion,
  • who has a sincere and scholarly interest in insect ecology, and
  • who wants to explore the very edges of what we know about the natural world.

While this project is well-funded, I will be looking for applicants who either have their own funding in hand, or who show the potential to pursue and receive their own funding. As noted above, our grant will allow for a suitable and livable graduate stipend. But finding your own funding is an important part of the graduate degree process, it looks great on your CV, and it provides you with one more layer of security during your time as a student. It also serves to free up some money that can then be used to support more experimentation, to hire valuable research assistants to help with your project, and to allow more trips to present your findings at conferences, etc. UNBC awards entrance scholarships for excellent students, maintains a number of other awards, has a tuition rebate for Ph.D. students, and provides a large number of TA-ships to supplement your income with pay for teaching experience.

If you come to work in our lab, you will find a pleasant group of people excited about their research. You will become a part of a close-knit group of researchers who are interested in many of the things that you are working on. You will also find UNBC to be a vibrant community with lots of great things going on. The surrounding city, Prince George, is a great place to live with many cultural opportunities in town and fantastic outdoor activities all around. And you can’t beat the reasonable rents or the five-minute commutes – or commute by bike in the summer and skis in the winter!.

If you are interested in this position, please email me at huber@unbc.ca for further details or to ask the questions that you probably have.

Thank you for reading this, and I look forward to hearing from you.

Beetle byte (4 October 2013 edition)

Hey, I’ve kept this up for a few weeks in a row!

Here are the now-regular (hopefully to stay that way… we’ll see how it goes) half-dozen Coleopteran mandible dainties.

You’re checking your smartphone too much!

The take-home, Ballard says, is that being connected isn’t always entirely a bad thing. “The benefits are only sustainable, however, when these tools are used in ways that are a good fit for each individual’s needs, skills and preferences.

 

Although your iPhone might be just fine

One option would be that rather than keeping the virtual and the natural worlds separate — turning off our machines, taking e-sabbaticals, or undergoing digital detoxes, in order to connect with nature — we think about them all as integrated elements of a single life in a single world. There is already a growing sense in the wired community that connections with the natural world are vital to digital well-being, both now and in the future. This same community needs to pay attention to biophilia and to its implementation in biophilic design. With the help of biophilic insights, we can connect the planet beneath our feet with the planet inside our machines.

 

Then again…

In school, and in other settings where adults are in charge, they make decisions for children and solve children’s problems. In play, children make their own decisions and solve their own problems. In adult-directed settings, children are weak and vulnerable. In play, they are strong and powerful. The play world is the child’s practice world for being an adult. We think of play as childish, but to the child, play is the experience of being like an adult: being self-controlled and responsible. To the degree that we take away play, we deprive children of the ability to practise adulthood, and we create people who will go through life with a sense of dependence and victimisation, a sense that there is some authority out there who is supposed to tell them what to do and solve their problems. That is not a healthy way to live.

 

One very sad place with no internet and minimal time for play

Before I talk about what I learned, I’d like to quickly say hi to whomever from the North Korean government is reading this. Only the highest-level officials have access to the internet in North Korea, and I learned that the job of one of them is to scour the internet for anything written about North Korea and keep tabs on what the foreign press is saying. So hi, and haha you can’t get me cause I’m back home now and I can say all the things I wasn’t allowed to say when I was in your country.

Now that I’ve jinxed myself to certain assassination, let’s get started—

 

Conservation and the fact that everyone is a taxonomist

Without even realizing it, we have traded a view of ourselves as living beings in a living world for a view of ourselves as consumers in a landscape of merchandise. We have unwittingly traded a facility with living things for a savant-like brand expertise that exchanges the language of the living world—the names of real plants and real animals—for a vocabulary of Tony the Tigers and Geico geckos. The world we live in, our simple reality, is the world of purchasable items. We have, without even trying, absolutely gotten what we’ve paid for. You might need a naturalist interpreter to help you make sense of things as you walk through the local forest, but you would never need such assistance when wandering through the mall.

Not surprisingly, we are also simultaneously trading the actual world of living things for a world filled instead with human-made products, with factories to build them, with stores to sell them, with homes to fill them with. While we’ve been busy shopping and the world’s diversity of human-made things has been increasing, the world’s wealth of living things has been dwindling.

 

Technology and nature swim with the sharks

Explore dozens of satellite tracks by selecting a species and individual shark…

These shark satellite tracks are part of an ongoing research project by RJD scientists to better understand the migratory routes and residency patterns of Tiger, Hammerhead, and Bull sharks in the subtropical Atlantic.

 

Bonus byte: Tubas

I’m not Grandpa Simpson (although I may sound that way)

Pretty much every morning I check the Google News page, and I generally scroll pretty quickly to the science headlines. Today one of the big headlines was about a fascinating new PLOS ONE study that shows quite conclusively that insects from several orders detect and respond to changes in barometric pressure. Such behavioral reactions in insects make sense as pressure changes usually indicate important changes in the weather that could jeopardize an insect’s reproductive success.

My antennae (no pun intended) immediately popped up because my hazy memory seemed to recall something like this being studied in bark beetles quite some time back. A quick search brought up this 1978 paper. I then went back to the PLOS ONE paper, and thankfully found the authors had cited the older paper in their final reference. The 1978 paper itself cites several other studies dating as far back to 1955 that hint at this kind of phenomenon. My bet is that this general phenomenon was observed prior to 1955, and further digging would take us quite a distance into the past.

The new result is extremely cool, of course. Hopefully it goes some way to reviving an old idea for some new and fruitful study. I don’t fault the study authors for the general tone of the 24 hour news cycle hype that seems to suggest that this is a brand new idea. The media are like that, and once a story gets into the hands of a journalist it can take on a life of its own no matter how careful the interviewed scientist was to state the full case. I suspect that most reporters rarely closely read reference sections.

That said, this little episode started me thinking a bit – with help from a few of my Twitter friends – about how we do science and how much, or how little, we pay attention to the past. Interestingly Chris Buddle at McGill University wrote a very prescient blog post just today that provides a perfect example of what I’m talking about. Specifically, there are certain aspects of the way that science is currently done that cause us to rush forward into the future without paying enough attention to the past.

I can think of three reasons for this, and perhaps you can think of others:

1. The tyranny of high-speed novelty – This comes in at least two flavors, but they’re both mixed into the same underlying ice cream. First, science news, like other news, comes to us from all directions. University communications offices and journal PR departments are eager to capitalize on this for what amounts to free advertising. Although scientists who read these interesting accounts know that science, in general, moves at a modest pace at best, there is likely a subconscious tweak that says “hey, you need to move faster, everyone else is.”

Second, university tenure and promotion committees and granting agencies require ongoing productivity. This makes sense, of course. But the main measure of productivity is the peer reviewed paper. This means that there are likely many papers that escape into the wild from the lab or field before their results are fully mature. Contrast this to, for instance, Charles Darwin who spent years studying barnacles to the point where he wrote in a letter:

I am at work on the second vol. of the Cirripedia, of which creatures I am wonderfully tired: I hate a Barnacle as no man ever did before, not even a Sailor in a slow-sailing ship. My first vol. is out: the only part worth looking at is on the sexes of Ibla & Scalpellum; I hope by next summer to have done with my tedious work.

This type of longterm commitment to a study still happens today, but often in special circumstances. Besides the fact that getting funding for Darwin-style barnacle research these days would be woefully difficult, proposing to conduct such a long study with no predetermined timeline or outcome would sink any proposal.

So there are career pressures on one side that push scientists into grant-cycle-length (or shorter) studies, and there is the constant barrage of news stories and CSI-like shows on the other other side that give the impression to the public that science moves at a furious pace. Both together add up to at least some degree of myopia across the board.

2. Referencing software – In this case I’m talking about products like EndNote and RefWorks and others that are very useful, but also potentially damaging in the development of a good vision of the past. To this day I still do all of my reference work in papers that I write or edit without these tools. I have tried various software solutions in the past, but I have found that they tend to distance me from the literature and dull my ability to remember what has been done before.

When I physically type in a reference, or even copy-and-patse a citation from a previous paper and revise to fit the journal standard, it forces me to think about that paper and the foundation on which it was built. This often leads me down a reference rabbit trail that can, on occasion, help me to contemplate the topic in a deeper manner. If, on the other hand, I simply input “(Smith et al. 1997)” and the software does the rest, my brain just carries on with what it’s doing and doesn’t necessarily make any new connections. The writing process should inherently be a learning process, and by letting software do parts of the work for us, I fear that one part of that process is going by the wayside.

3. Online access – At this point I’m going to start to sound a bit like this guy, so please just roll your eyes for a moment and then hear me out. First, note that I think that the fact that much of the scientific literature in the world is now online is a great thing. Even better is the fact that a lot of it is either open access or is heading that way.

Now here’s the part where I will start to sound old. When I started my Ph.D. in 1995, the internet as we know it today had just barely gotten off of the ground. Prior to that I had been using things like GOPHER, ELM, and PINE… many of you probably have no clue what I’m even talking about here. The long and short of it was that virtually all scholarly outputs were on paper in the library. When I was researching a subject, I would go to the library, use an index based on a mainframe (or even extensive tomes of the paper version of Biological Abstracts), and then get a rolling cart that I’d push around the library. My cart and I would head through the stacks, picking up volumes along the way. Then I’d go to the central photocopying area to copy the articles that I wanted to read. Later, back at my desk or lab bench I’d read the articles and circle any references that I needed in order to delve back further into the literature. Then I’d make my way back to the library and restart the process. Chasing references was a process that took time and allowed for thought.

Today I fire up my web browser, point it at Google Scholar, do a few quick searches, and then I’m off to the races. If, while I’m reading a paper, I see a reference that interests me, there’s usually a hyperlink there to take me right to that paper. Within minutes my virtual desktop can be full of PDFs, enough to keep me busy reading for weeks. Reference chasing now takes no time at all.

The problem with the old process was that it was painfully slow and labor intensive. The problem with the new process is that those silicon brains are so fast that they don’t allow time for our human brains to stop to really think. In 1998, when I was standing by the photocopier, I was also mulling over the papers that were dropping into the copier tray. The process forced the time to think on me because I really couldn’t go anywhere else while the copier was doing its job or while I was wandering through the stacks. In 2013 the process should provide me with more time to think because it is a lot faster. But that extra time does not necessarily get filled with contemplation unless I make it so. And there are many pressures – and temptations – that all of us face that can easily reduce that technologically found time into lost time in no time.

It should also be noted that while there used to be a “demographic” gap in the papers that were online, most journals have now archived almost their entire collection (e.g., a shameless plug for a fine journal here). This is to our benefit, if we take advantage of it.

 _____

So what can be done about this? There is not much that we can immediately do about media, administration, granting agency, or public expectations and perception because these are all an ingrained part of the current culture. Cultural shifts take time.

The challenge to scientists, then, is to work to change that culture, one researcher and one act at a time. I am not blaming referencing software or online journals. Far from it. Both are vital parts of the process in our era, and both bring benefits that were hardly imagined a couple of decades ago. But with this technology comes a responsibility to ensure that we are doing things like undertaking longterm studies; reading deeply into the literature; spending time contemplating instead of getting caught up in a Red Queen scenario; making sure that both our students and ourselves understand and explore the deep foundations of current breakthroughs; and doing our level best to get it across to the media that our results are only possible because of work that has been done by others.

We owe it to our students, to the public, to our scientific “ancestors,” to our current colleagues, and to ourselves.

Watching hockey

A found poem that I was given while hanging out with some Vancouver Canucks fans a few playoffs ago… in celebration of the first regular season face-off of the 2013/2014 season.

—–

Watching hockey

Look at that.
Did you see that?
How could they miss?

Did you see that?
Just dump it in.
No!

You can’t do that,
You know?
Just sit back like that
On your heels.

C’mon. Let’s put one in guys.
I can’t watch.

C’mon guys. Get it out.
I can’t watch.

See!
We haven’t won one face-off yet.

OK dump it in.
Carry it now!
Offside!

Oh no!
How did that not go in?

Oh man!
What happened there?
That should be a penalty shot.

Too many men on the ice,
Again!

I can’t watch.
Settle down boys!

Whoa!
That would’ve been close.
Maybe one of these times.
Maybe an odd-man rush?

Noooo…
Don’t let him walk in.

Oh my goodness!
How did that not go in?
Look at that open space!
That goalie’s good.

Offside,
You turkeys.

I told you.
They have one of the best
Goalies in the league.

Looks like…
We’re going into second overtime?

Maybe a goal on the face-off?
No such luck.
Is this game gonna go to midnight?

Oh I hate that.
Just dumping the puck.
C’mon.

Oh!
That hurts.

Noooooo!
Game over.

We can’t go to the end
With one goal.

It’s too thin.

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